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<channel>
	<title>ChemCafé &#187; science</title>
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	<description>Chemistry and beyond</description>
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		<title>Chemical elements in limited supply</title>
		<link>http://www.chemcafe.net/chemical-elements-in-limited-supply/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=chemical-elements-in-limited-supply</link>
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		<pubDate>Sun, 27 Feb 2011 13:15:44 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[chemical elements]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[lanthanides]]></category>
		<category><![CDATA[rare earth]]></category>
		<category><![CDATA[recycling]]></category>
		<category><![CDATA[research]]></category>
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		<category><![CDATA[sustainability]]></category>

		<guid isPermaLink="false">http://www.chemcafe.net/?p=701</guid>
		<description><![CDATA[During the second half of 2010 a term usually reserved to specialized audiences started to spread in mainstream media: the rare-earth elements. Although they are not so scarce as their name would suggest, increasing concerns about their availability in the near future were expressed, and a recent issue of Nature Materials featured several articles dedicated [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">During the second half of 2010 a term usually reserved to specialized audiences started to spread in mainstream media: the rare-earth elements. Although they are not so scarce as their name would suggest, increasing concerns about their availability in the near future were expressed, and a recent issue of Nature Materials featured several articles dedicated to their numerous uses as well as to their limited sources.[1]</p>
<p style="text-align: justify;">The importance of rare earth elements is less obvious that that of more common resources &#8211; we don&#8217;t eat them nor power our cars with them. However, their use in many of recent high-tech innovations make them an invaluable resource for the decades to come: computer hard drives contain neodymium and dysprosium, tellurium is used in solar cells, and several rare earth elements are so far irreplacable in optical devices such as lasers, LEDs and phosphors. Although rare earths are not so scarce, their distribution on earth is uneven &#8211; and more than 90% are currently produced in China. The US and other countries consider (re)opening mining sites, but for the upcoming years, China will have an increasing weight and decision power over prices and distribution of rare earths.</p>
<p style="text-align: justify;">In order to ensure a sustainable use of scarce elements, strong incentives will be needed. For example in Japan, a country without such resources which industry highly depends on importation, the Element Strategy Initiative is a good example of such efforts.[2] Besides reuse and recycling, the potential lack of such elements can be regarded as another challenge for researchers worldwide, who are trying to find alternative materials, thus reducing the need for rare earths in the future.[3]</p>
<p style="text-align: justify;">More generally, the rare earth issue reflects a more general problem that may occur in the upcoming decades: I remember a seminar where a professor mentioned that, if the current trends go on, we will be running out of most precious metals (e.g., rhodium, platinum) in less than a hundred years. Further, resources of lithium (for rechargeable batteries) and phosphorous (for fertilizers) are also limited. In every single field, from &#8217;simple&#8217; food production to state-of-the-art technologies, the limited resources of our planet will eventually constrain us to play the equilibrist&#8217;s game of long-term sustainability.</p>
<p>References:</p>
<p>[1] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 157. DOI: <a title="Elements in short supply" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2985.html" target="_blank">10.1038/nmat2985</a><br />
[2] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 158. DOI: <a title="Managing the scarcity of chemical elements" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2969.html" target="_blank">10.1038/nmat2969</a><br />
[3] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 162. DOI: <a title="Purveyor of the rare" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2973.html" target="_blank">10.1038/nmat2973</a></p>
<p>See also:</p>
<p><em>Nature Photonics</em> <strong>2011</strong>, <em>5</em>, 1. DOI: <a title="The new oil?" href="http://www.nature.com/nphoton/journal/v5/n1/full/nphoton.2010.308.html" target="_blank">10.1038/nphoton.2010.308</a></p>
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		<title>Scientists and the Media: must do better</title>
		<link>http://www.chemcafe.net/scientists-and-the-media-must-do-better/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=scientists-and-the-media-must-do-better</link>
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		<pubDate>Tue, 11 Jan 2011 20:43:11 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Opinions]]></category>
		<category><![CDATA[arsenic]]></category>
		<category><![CDATA[bacteria]]></category>
		<category><![CDATA[climategate]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=679</guid>
		<description><![CDATA[At a time when public expenses are shrinking, scientists are under close scrutinity and must justify the money they spend. Researchers are therefore increasingly exposed to the media, and it seems appropriate to ask whether they are ready for that. Two recent examples tend to show that they are not. The first is the clumsy [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">At a time when public expenses are shrinking, scientists are under close scrutinity and must justify the money they spend. Researchers are therefore increasingly exposed to the media, and it seems appropriate to ask whether they are ready for that. Two recent examples tend to show that they are not. The first is the clumsy way the leaks (a trendy work these days&#8230;) of e-mails that occured at the end of 2009 at the Climatic Research Unit of the University of East Anglia were dealt with (see <a title="Climatologists under pressure" href="http://www.nature.com/nature/journal/v462/n7273/full/462545a.html" target="_blank">this editorial</a> in Nature), resulting in phrases from the emails being taken completely out of context by climate change sceptics, and in unwelcom confusion for the public.</p>
<p style="text-align: justify;">The second, more recent example of poor communication is provided by the recent buzz that accompanied the <a title="A Bacterium That Can Grow by Using Arsenic Instead of Phosphorus" href="http://www.sciencemag.org/content/early/2010/12/01/science.1197258" target="_blank">publication</a> in Science by researchers from the NASA astrobiology institute and the US geological survey  of the existence of bacteria that can integrate arsenic under certain conditions &#8211; a discovery that clearly expands the view of what it takes for living things to survive. The purpose here is not to discuss the validity of the presented science (others have done it better) but the way the information was handled and passed to general public. A few days before the official publication of the article, I found on the web page of a <a href="http://www.lematin.ch/actu/monde/decouverte-vie-extra-terrestre-nasa-laisse-planer-doute-356226">swiss popular journal</a> an intriguing title about a discovery that &#8220;will impact the search for evidence of extraterrestrial life&#8221;, and was quite excited to see what it was about. Then came the proper article in Science. Although the research was quite interesting, I had some difficulties to see the direct link with extraterrestrial life. This is the first fact that is disturbing to me and, I imagine, <a href="http://www.lematin.ch/actu/monde/espace-356834">to the general public</a>: the press release promises E.T. and the finding turns out to be a bacterium&#8230; not so impressive at first sight! The second disturbing fact is the way the involved research team treated the (sometimes quite harsh) criticism that burgeoned soon after the release of the Science article: at first, they refused to address any type of criticism (see <a title="Microbe gets toxic response" href="http://www.nature.com/news/2010/101207/full/468741a.html" target="_blank">here</a>), claiming that any further debate should be peer-reviewed as the article had been. It is perfectly understandable that they were not going to reply to every random blog commenting about their findings, but as they did start the fanfare with the initial press conference, they were expected to take their responsibilities when questions would come.</p>
<p style="text-align: justify;">In retrospect, one of the very visible and damaging consequences of both cases appeared in recent interviews of the protagonists: <a title="Climate: The hottest year" href="http://www.nature.com/news/2010/101115/full/468362a.html" target="_blank">Phil Jones</a> for the infamous <em>climategate</em> at the University of East Anglia, and <a title="Discoverer Asks for Time, Patience Over Arsenic Bacteria Controversy" href="http://www.sciencemag.org/content/330/6012/1734.full?sid=2e17186a-dc55-4438-945e-bee9f8c86eeb" target="_blank">Felisa Wolfe-Simon</a> for the bacterium isolated in California: both were unprepared to media exposure and went through extremely hard, exhausting times. This is at most partially their fault: scientists have been cloistered for a too long time in their &#8216;ivory towers&#8217;, and now that they are increasingly confronted to media and the public, they lack skills on how to deal with sudden broad exposure. I even know some professors who simply don&#8217;t see the point of talking to the public &#8211; there also exist <a title="Robots" href="http://www.robotspodcast.com/" target="_blank">good examples</a> of scientists communicating to the public! &#8211; and I would strongly advocate a proper training for scientists in communication, particularly when it comes to speak to broader audiences or under particularly pressuring circumstances.</p>
<p style="text-align: justify;">In order to keep credibility and respect, scientists must communicate to the general public in a way that is both honest and clearly understandable. This results in a general interest for research, as well as a better understanding of money spending by tax payers, who are in most places the first sponsor of science.</p>
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		<title>The Nano-Matterhorn</title>
		<link>http://www.chemcafe.net/the-nano-matterhorn/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=the-nano-matterhorn</link>
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		<pubDate>Sun, 31 Oct 2010 21:36:51 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[IBM]]></category>
		<category><![CDATA[lithography]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=637</guid>
		<description><![CDATA[Swiss people usually share a deep love for their mountains. So it is not such a surprise to see that researchers from IBM Research in Zurich, after having developed a new &#8216;nano-carving&#8217; method, wanted to show it at work by sculpting a nanometric version of our most famous peak.
In a recent article in Science, Pires [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Swiss people usually share a deep love for their mountains. So it is not such a surprise to see that researchers from IBM Research in Zurich, after having developed a new &#8216;nano-carving&#8217; method, wanted to show it at work by sculpting a nanometric version of our most famous peak.</p>
<p style="text-align: justify;">In a recent <a title="Nanoscale Three-Dimensional Patterning of Molecular Resists by Scanning Probes" href="http://www.sciencemag.org/cgi/content/abstract/328/5979/732" target="_blank">article</a> in <a title="Science" href="http://www.sciencemag.org/" target="_blank">Science</a>, Pires et al. report a new lithographic method based on the local desorption of an organic resist by a heatable probe. A hot, sharp tip is employed as a nano-pen to scratch a surface covered by a layer of a polyphenolic compound. Repeating the process over and over again results in 3-dimensional patterns, and the obtained motif can be transferred to various substrates. For example, they started by carving the IBM logo, but then needed a more demanding task. They tackled the challenge offered by the well known <a title="Matterhorn" href="http://en.wikipedia.org/wiki/Matterhorn" target="_blank">Matterhorn</a> shape. The nanomountain was carved into a 100 nm thick film after 120 separate  steps. The model they created (picture below) stands 25 nanometers tall, which is 179&#8242;120&#8242;000&#8242;000 smaller than the 4478 meter high Matterhorn!</p>
<div id="attachment_641" class="wp-caption aligncenter" style="width: 764px"><img class="size-full wp-image-641" title="328_732_F4" src="http://www.chemcafe.net/wp-content/uploads/2010/10/328_732_F4.jpeg" alt="AFM scan of the replica of the Matterhorn written into the molecular glass" width="754" height="380" /><p class="wp-caption-text">AFM scan of the replica of the Matterhorn written into the molecular glass</p></div>
<p style="text-align: justify;">New methods for nanofabrication allowing to create functional structures are highly seeked, and research such as that presended here is promising, because it seems to be scalable to more practical uses.</p>
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		<title>And the 2010 Nobel Prize in Chemistry goes to&#8230; Chemistry!</title>
		<link>http://www.chemcafe.net/and-the-2010-nobel-prize-in-chemistry-goes-to-chemistry/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=and-the-2010-nobel-prize-in-chemistry-goes-to-chemistry</link>
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		<pubDate>Wed, 06 Oct 2010 11:43:37 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
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		<category><![CDATA[cross-coupling]]></category>
		<category><![CDATA[nobel]]></category>
		<category><![CDATA[nobel prize]]></category>
		<category><![CDATA[organic chemistry]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=630</guid>
		<description><![CDATA[After yesterday&#8217;s Nobel Prize in Physics which went to two relatively young researchers (Andre Geim* and Konstantin  Novoselov from the University of Manchester) for a very recent discovery (graphene, isolated in 2004), today&#8217;s Prize in Chemistry went to much older people for discoveries made 40 years ago: Richard F. Heck (emeritus professor at the [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">After yesterday&#8217;s <a title="2010 Nobel Prize in Physics" href="http://nobelprize.org/nobel_prizes/physics/laureates/2010/index.html" target="_blank">Nobel Prize in Physics</a> which went to two relatively young researchers (<a title="Andre Geim" href="http://onnes.ph.man.ac.uk/~geim/" target="_blank">Andre Geim</a>* and <a title="Konstantin Novoselov" href="http://www.manchester.ac.uk/research/konstantin.novoselov/" target="_blank">Konstantin  Novoselov</a> from the <a title="University of Manchester" href="http://www.manchester.ac.uk/" target="_blank">University of Manchester</a>) for a very recent discovery (graphene, isolated in 2004), today&#8217;s <a title="2010 Nobel Prize in Chemistry" href="http://nobelprize.org/nobel_prizes/chemistry/laureates/2010/index.html" target="_blank">Prize in Chemistry</a> went to much older people for discoveries made 40 years ago: Richard F. Heck (emeritus professor at the <a title="University of Delaware" href="http://www.udel.edu/" target="_blank">University of Delaware</a>), Prof. <a title="Ei-ichi Negishi" href="http://www.chem.purdue.edu/people/faculty/faculty.asp?itemID=52" target="_blank">Ei-ichi Negishi</a> from <a title="Purdue University" href="http://www.purdue.edu/" target="_blank">Purdue University</a>, and Akira Suzuki (emeritus professor at <a title="Hokkaido University" href="http://www.hokudai.ac.jp/en/" target="_blank">Hokkaido University</a>) were awarded <em>for palladium-catalyzed cross couplings in organic synthesis</em>. As mentioned by the Nobel Committee, the developed reactions made it possible to synthesize many new molecules of biological and medical interest (among them taxol and discodermolide) and will continue to have a great impact on research and engineering in the future. One can speculate whether some other pioneers of palladium catalysis would also have deserved the prize (Stille, Tsuji, Trost) but it&#8217;s good to see the Nobel Prize in chemistry awarding &#8216;real&#8217; chemists again!</p>
<p style="text-align: justify;">On the live webcast visible on the <a title="nobelprize.org" href="http://nobelprize.org/index.html" target="_blank">Nobelprize</a> website, the Prize announcement was followed by a live phone interview with Prof. Negishi. He let the audience know he was awaken at 5 in the morning by the phone call announcing him the good news, and that he just had time for a coffee before the interview took place. I imagine this was but the beginning of a very long day for him! Quite amusing was when a journalist asked Negishi about the impact of his discoveries for the human beings. At that, Negishi responded something like &#8216;Do you have any knowledge of Grignard chemistry?&#8217; The journalist laughed before admitting that he had no clue about it, and Negishi explained the impact of carbon cross couplings in much simpler terms.</p>
<p style="text-align: justify;">* Andre Geim is probably the first researcher to detain a Nobel Prize together with a Ig Nobel Prize, obtained in 2000 for <a title="Of flying frogs and levitrons" href="http://iopscience.iop.org/0143-0807/18/4/012/" target="_blank">levitating a frog with magnets</a>.</p>
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		<title>More chemistry from Nürnberg</title>
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		<pubDate>Sun, 05 Sep 2010 14:48:45 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[Anslyn]]></category>
		<category><![CDATA[catalysis]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=616</guid>
		<description><![CDATA[Tuesday&#8217;s plenary session involved Bert Meijer (from Eindhoven University of Technology) speaking about self-organizing polymers into complex assemblies. Very interesting stuff, and I spent part of the day in the session of supramolecular chemistry, attending a  lecture by Eric Anslyn on one of my favourite topics (arrays of differential sensors), and some time in [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Tuesday&#8217;s plenary session involved <a title="Prof. E. W. Meijer" href="http://www.icms.tue.nl/en/people/prof_dr_ew_bert_meijer/" target="_blank">Bert Meijer</a> (from <a title="Eindhoven University of Technology" target="_blank" href="http://w3.tue.nl/en/">Eindhoven University of Technology</a>) speaking about <strong>self-organizing polymers</strong> into complex assemblies. Very interesting stuff, and I spent part of the day in the session of supramolecular chemistry, attending a  lecture by <a title="Prof. E. V. Anslyn" href="http://anslyn.cm.utexas.edu/research/index.html" target="_blank">Eric Anslyn</a> on one of my favourite topics (arrays of <strong>differential sensors</strong>), and some time in the catalysis session, where I observed a very clear trend towards the use of &#8216;environmentally friendly&#8217; metal catalysts such as copper or iron and a slow disappearance of precious metals such as platinum or rhodium. As one of the speakers said (unfortunately I forgot his name), &#8216;The stone age didn&#8217;t end because we ran out of stones&#8217;, and the &#8216;precious metals age&#8217; might well go to an end before we run out of precious metals!</p>
<p style="text-align: justify;">The next day, I saw a talk from <a title="Prof. L. de Cola" href="http://www.uni-muenster.de/Physik.PI/DeCola/ldc.html" target="_blank">Luisa de Cola</a>, who makes really nice looking assemblies of <strong>zeolithes</strong> with alternating colors (very recently reported in <a title="Dynamic Microcrystal Assembly by Nitroxide Exchange Reactions" href="http://onlinelibrary.wiley.com/doi/10.1002/anie.201002851/abstract" target="_blank">Angewandte</a>), and one from <a title="Prof. Leroy Cronin" href="http://www.chem.gla.ac.uk/cronin/" target="_blank">Lee Cronin</a> who, presented the concept of iChell (hope Apple did not protect the name) as inorganic chemical cell, made of large polyoxometallate compounds.</p>
<div id="attachment_618" class="wp-caption aligncenter" style="width: 716px"><img class="size-full wp-image-618 " title="mcontent" src="http://www.chemcafe.net/wp-content/uploads/2010/09/mcontent.gif" alt="Self-assembly of “green” zeolite crystals and &quot;red” crystals leads to highly regular crystal chains with strictly alternating colors. (reproduced from Schulte, B., Tsotsalas, M., Becker, M., Studer, A. and De Cola, L. ,  Angew. Chem. Int. Ed. doi: 10.1002/anie.201002851)" width="706" height="114" /><p class="wp-caption-text">Self-assembly of “green” zeolite crystals and &quot;red” crystals leads to highly regular crystal chains with strictly alternating colors. (reproduced from Schulte, B., Tsotsalas, M., Becker, M., Studer, A. and De Cola, L. ,  Angew. Chem. Int. Ed. doi: 10.1002/anie.201002851)</p></div>
<p style="text-align: justify;">Wednesday was also the day of the Congress Party, that took place in the VIP area of the football stadium (the easyCredit Stadion) with a big buffet and unlimited drinks, human table football games, and fireworks. That was quite a party, and a very good time&#8230; I hope they put some pics on the <a title="EuCheMS Congress in Nürnberg" href="http://www.euchems-congress2010.org/" target="_blank">congress website</a> soon!</p>
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		<title>Does technological progress mean less respect?</title>
		<link>http://www.chemcafe.net/does-technological-progress-mean-less-respect/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=does-technological-progress-mean-less-respect</link>
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		<pubDate>Mon, 30 Aug 2010 23:07:04 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Miscellaneous]]></category>
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		<description><![CDATA[Still reporting from Nürnberg (where the EuCheMS meeting takes place this week), I had the opportunity this morning to observe and think on how people behave at a conference.
In my imagination, conferences in the past involved a passionate speaker (usually wearing a hat) who was disclosing his/her latest discoveries, vehemently speaking or writing on a [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Still reporting from Nürnberg (where the <a title="3 rd EuCheMS Chemistry Congress Nürnberg 2010" href="http://www.euchems-congress2010.org/" target="_blank">EuCheMS meeting</a> takes place this week), I had the opportunity this morning to observe and think on how people behave at a conference.</p>
<p style="text-align: justify;">In my imagination, conferences in the past involved a passionate speaker (usually wearing a hat) who was disclosing his/her latest discoveries, vehemently speaking or writing on a blackboard (sometimes performing live experiments) while the audience was listening in a profound, respectful silence.</p>
<p style="text-align: justify;">Today, what I saw was somewhat different &#8211; and I&#8217;m not talking of speakers not wearing hats. Actually, I was at a presentation seating next to a professor, <em>who was preparing the powerpoint he was going to present in the afternoon</em>. To do this, he had to ask his collaborator, seated next to him, about the meaning of some graphs he intended to include in the presentation. This took approximately one hour, and was quite disturbing to all the people around, since the discussion included mumblings and laughters.</p>
<p style="text-align: justify;">So, without even considering half of the members of the audience who checked their e-mails or the news on CNN every 5 minutes on their iPhone, I was wondering whether the speaker was noticing this lack of attention. The answer I guessed is probably no (because speakers are generally too busy and stressed to notice what happens behind the front row) but still, I&#8217;m wondering why people go to talks to prepare their own slides??</p>
<p style="text-align: justify;">Besides, I wanted to mention today&#8217;s plenary session, where Prof. <a title="Michael Grätzel" href="http://isic2.epfl.ch/page58671-en.html" target="_blank">Michael Grätzel</a> from <a href="http://www.epfl.ch/index.en.html">EPFL</a> (it&#8217;s always funny to go abroad to attend talks from our own faculty) presented the latest advances in dye sensitized solar cells (DSCs). I still hope to write a full post about Prof. Grätzel&#8217;s work sometimes  (like next October 6th), and here I just want to mention that there is now a <a title="Michael Grätzel Center" href="http://222.20.94.9:8083/article.php?catPath=0,1,1019&amp;catID=1035&amp;articleID=172" target="_blank">Michael Grätzel Center</a> in Wuhan (China) which, I think, is quite something. The optimism and enthusiasm of Prof. Grätzel are always extraordinarily communicative (especially when it comes to <a title="Dyesol" href="http://www.dyesol.com/page/Home" target="_blank">recent applications</a>), and I&#8217;m deeply convinced that the future is bright for dye-sensitized solar cells</p>
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		<title>On the Use of Mice as Reaction Vessels</title>
		<link>http://www.chemcafe.net/on-the-use-of-mice-as-reaction-vessels/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=on-the-use-of-mice-as-reaction-vessels</link>
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		<pubDate>Mon, 01 Feb 2010 22:50:17 +0000</pubDate>
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		<description><![CDATA[Synthetic chemists use to perform their reactions in various pieces of glassware such as round-bottomed flasks, vials, Schlenk tubes of simple beakers. An article recently published in PNAS(1) reports synthetic chemistry performed in an unusual environment, as the authors present it, &#8216;in the physiologically relevant context of a mouse&#8216;!
The team from University of California (UC) [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;"><strong>Synthetic chemists</strong> use to perform their reactions in various pieces of glassware such as round-bottomed flasks, vials, Schlenk tubes of simple beakers. An <a title="Copper-free click chemistry in living animals" href="http://www.pnas.org/content/early/2010/01/07/0911116107.abstract" target="_blank">article</a> recently published in <a title="Proceedings of the National Academy of Sciences of the USA" href="http://www.pnas.org/" target="_blank">PNAS</a>(1) reports synthetic chemistry performed in an unusual environment, as the authors present it, &#8216;in the physiologically relevant context of a <strong>mouse</strong>&#8216;!</p>
<p style="text-align: justify;">The team from <a title="UC Berkeley" href="http://berkeley.edu/" target="_blank">University of California (UC) Berkeley</a>, and the <a target="_blank" title="Lawrence Berkeley National Laboratory" href="http://www.lbl.gov/">Lawrence Berkeley National Laboratory</a>, led by <a title="Bertozzi Research Group" href="http://www.cchem.berkeley.edu/crbgrp/" target="_blank">Carolyn Bertozzi</a>, adapted the methodology known as &#8216;<strong>click-chemistry</strong>&#8216; to the particular conditions required by &#8216;in vivo&#8217; conditions. Indeed, the original &#8216;click&#8217; procedures, developed by Barry Sharpless (2), involved the use of <strong>toxic copper catalysts</strong>. In their article, the authors use a copper-free click reaction to label <strong>glycans</strong> &#8211; sugars particularly abundant on the surface of cells, where they are active in cell activity signalling, as well as in response to infections &#8211; which are thought of as appealing target for molecular imaging inside living organisms.</p>
<p style="text-align: justify;">The first step involved the injection of azide-containing sugar derivatives, which are known to metabolically label glycans with the azide function. Then, a purposedly designed molecule carrying a signalling unit as well as a function reactive towards azides, had to be injected. The click reaction proceeded and as a result, glycans could be labeled in vivo, which paves the way for future <strong>specific biomolecule labeling</strong> <em>inside</em> living organisms.</p>
<div id="attachment_573" class="wp-caption aligncenter" style="width: 492px"><img class="size-full wp-image-573" title="mouse" src="http://www.chemcafe.net/wp-content/uploads/2010/02/mouse.jpg" alt="Click chemistry inside a mouse (reproduced from ref. 1)" width="482" height="427" /><p class="wp-caption-text">Click chemistry inside a mouse (reproduced from ref. 1)</p></div>
<p style="text-align: justify;">References:<br />
(1) Pamela V. Chang, Jennifer A. Prescher, Ellen M. Sletten, Jeremy M. Baskin, Isaac A. Miller, Nicholas J. Agard,<br />
Anderson Lo, and Carolyn R. Bertozzi, &#8220;Copper-free click chemistry in living animals&#8221;, <em>Proc. Natl. Acad. Sci. USA</em>,  published online before print January 14, 2010. doi:<a href="http://www.pnas.org/content/early/2010/01/07/0911116107.abstract" target="_blank" title="Copper-free click chemistry in living animals">10.1073/pnas.0911116107</a></p>
<p style="text-align: justify;">(2) H. C. Kolb, M. G. Finn and K. B. Sharpless &#8220;Click Chemistry: Diverse Chemical Function from a Few Good Reactions&#8221;, <em>Angew. Chem., Int. Ed.</em> <strong>2001</strong>, <em>40</em> 2004–2021. doi:<a title="Click Chemistry: Diverse Chemical Function from a Few Good Reactions" href="http://www3.interscience.wiley.com/journal/82003397/abstract" target="_blank">10.1002/1521-3773(20010601)40:11&lt;2004::AID-ANIE2004&gt;3.0.CO;2-5</a></p>
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		<title>Organophosphorus Chemistry &#8211; How to get rid of nerve agents?</title>
		<link>http://www.chemcafe.net/organophosphorus-chemistry-how-to-get-rid-of-them/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=organophosphorus-chemistry-how-to-get-rid-of-them</link>
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		<pubDate>Mon, 12 Oct 2009 19:12:09 +0000</pubDate>
		<dc:creator>admin</dc:creator>
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		<description><![CDATA[When inhalated, organophosphorus compounds can cause death within minutes. Although they are prohibited by the Chemical Convention Weapons, several states still possess large stockpiles of these chemicals, and terrorist organisations are not particularly known for complying with international conventions &#8211; one of these organophosphorus compounds is sarin, (in)famous for having been spread in the Tokyo [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">When inhalated, <strong>organophosphorus compounds</strong> can cause death within minutes. Although they are prohibited by the Chemical Convention Weapons, several states still possess large stockpiles of these chemicals, and terrorist organisations are not particularly known for complying with international conventions &#8211; one of these organophosphorus compounds is <strong>sarin</strong>, (in)famous for having been spread in the Tokyo subway by the sect Aum Shinrikyo in 1995, killing 12 people and injuring a thousand others.</p>
<p style="text-align: justify;">In this context, lots of effort is dedicated to find ways to detect and destroy such compounds before they can cause harm. An appealing solution was recently proposed by a research team led by <a href="http://www.scripps.edu/skaggs/rebek/" target=£"_blank" title="Julius Rebek Jr.">Julius Rebek, Jr</a>. at the <a href="http://www.scripps.edu/e_index.html" target="_blank" title="The Scripps Research Institute">Scripps Institute</a>. In an article recently published in <a href="http://www3.interscience.wiley.com/journal/26737/home" target="_blank" title="Angewandte Chemie International Edition">Angewandte</a>, they show how their novel molecules can signal the presence of organophosphorus compounds, but also render them harmless by undergoing a rapid reaction.</p>
<p style="text-align: justify;">The sensing systems is based on an aromatic ring equipped with an oxime group (C=N-OH), which is known to react with organophosphorus compounds. The intermediate product instantaneously reacts further (which is important since at this point, the toxicity survives) to form a harmless decomposition compound and a fluorescent unit, which is used to signal the fact that the reaction has occured, and therefore the presence of toxic chemicals! Really smart approach!</p>
<p><img class="aligncenter size-full wp-image-496" title="rebek" src="http://www.chemcafe.net/wp-content/uploads/2009/10/rebek.bmp" alt="rebek" /></p>
<p>References:<br />
T. J. Dale, J. Rebek, Jr. <em>Angew. Chem., Int. Ed.</em> <strong>2009</strong>, <em>48</em>, 7850 –7852. <a href="http://www3.interscience.wiley.com/journal/122597479/abstract" target="_blank" title="Hydroxy Oximes as Organophosphorus Nerve Agent Sensors">DOI: 10.1002/anie.200902820</a></p>
<p>Press release: <a href="http://www.wiley-vch.de/vch/journals/2002/press/200936press.html" target="_blank" title="New reagent for the detection of organophosphate neurotoxins with an extremely fast response">Ring Closure as Warning</a></p>
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		<title>2009 Nobel Prize in &#8220;Chemistry&#8221;</title>
		<link>http://www.chemcafe.net/2009-nobel-prize-in-chemistry/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=2009-nobel-prize-in-chemistry</link>
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		<pubDate>Wed, 07 Oct 2009 20:06:27 +0000</pubDate>
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		<description><![CDATA[It is a pity Mr Nobel did not think about including a prize for biology in his final will. Today&#8217;s announcement was eagerly awaited in my department, particularly since a very member of our institute was part of the Thomson Reuters nominees, which raised considerable buzz over the last couple of weeks. We all crossed [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">It is a pity <a title="Alfred Nobel" href="http://nobelprize.org/alfred_nobel/" target="_blank">Mr Nobel</a> did not think about including a prize for biology in his final will. Today&#8217;s announcement was eagerly awaited in my department, particularly since a very member of our <a title="ISIC EPFL" href="http://isic2.epfl.ch/page69066.html" target="_blank">institute</a> was part of the <a title="Thomson Reuters 2009 Nobel Prize predictions" href="http://science.thomsonreuters.com/nobel/nominees/" target="_blank">Thomson Reuters nominees</a>, which raised considerable buzz over the last couple of weeks. We all crossed our fingers for Prof <a title="Michael Grätzel" href="http://isic2.epfl.ch/page58671.html" target="_blank">Michael Grätzel</a> to be the awardee, but only to discover that the Prize was going, again, to&#8230; biology.</p>
<p style="text-align: justify;">Of course, I am not critisizing the <a title="2009 Nobel Prize in Chemistry Laureates" href="http://nobelprize.org/nobel_prizes/chemistry/laureates/2009/" target="_blank">recipients</a>&#8216; work (anyway, I couldn&#8217;t since I am a chemist and don&#8217;t know lots of things about ribosomes, apart from their double-potato shape they always have in basic biology textbooks) nor the fact that it deserves recognition, but the point is that the Nobel prize in chemistry went to people who actually do chemistry, say, five times in the last 10 years (2000: conductive polymers, 2001: catalysis, 2002: mass spec and NMR, 2003: cell membranes, 2004: ubiquitin and protein degradation, 2005: metathesis, 2006: eukaryotic transcription, 2007: chemistry on surfaces, 2008: GFP and 2009: ribosomes). So, what about creating a Nobel Prize in biology? They did it for Economics in the 60s&#8230;</p>
<p style="text-align: justify;">Well now we just have to wait for next year &#8211; and hope that people working with molecules lighter than 50 kDa will be recognized as chemists. I&#8217;m quite sure there are hosts of guys working in organic synthesis, catalysis, nanotechnology or physical chemistry &#8211; to mention a few &#8211; who deserve to get the next Nobels. And regarding Grätzel&#8230; I keep my celebrating post for next year!</p>
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		<title>WolframAlpha: A useful resource for chemistry basics</title>
		<link>http://www.chemcafe.net/a-useful-resource-for-chemistry-basics/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=a-useful-resource-for-chemistry-basics</link>
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		<pubDate>Tue, 29 Sep 2009 18:20:17 +0000</pubDate>
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		<description><![CDATA[Among the loads of various &#8216;concentration calculators&#8217; and &#8216;grams-versus-moles converters&#8217; that are available online, I think the one provided by WolframAlpha can be quite useful and is nicely done. For example, if you need to know how many moles of iron are present in 5 grams, just query &#8216;how many moles are in 5 grams [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Among the loads of various &#8216;concentration calculators&#8217; and &#8216;grams-versus-moles converters&#8217; that are available online, I think the one provided by <a href="http://www.wolframalpha.com/" target="_blank" title="WolframAlpha">WolframAlpha</a> can be quite useful and is nicely done. For example, if you need to know how many moles of iron are present in 5 grams, just query &#8216;how many moles are in 5 grams of iron?&#8217; and the answer is computed and -in principle- given together with unit conversions. More generally, if you&#8217;d like to obtain information on, say, ruthenium, just type &#8216;ruthenium&#8217; in the query bar, and you&#8217;ll quickly get the element&#8217;s position in the periodic table, as well as its most important chemical and physical properties. Last but not least, this very practical tool for students: if you enter &#8216;5M NaCl&#8217;, you directly obtain the quantity of salt to dissolve in order to prepare your solution!</p>
<p><img class="aligncenter size-full wp-image-467" title="chemistry_1" src="http://www.chemcafe.net/wp-content/uploads/2009/09/chemistry_1.gif" alt="chemistry_1" width="500" height="351" /></p>
<p style="text-align: justify;">Now, to be complete, I must mention that WolframAlpha comes with some limitations &#8211; or should I say, it is still being developed &#8211; but may well become an interesting alternative to other search engines. Among the limitations, if for example you enter &#8216;taxol&#8217; in the query bar, you obtain a very approximate structure of the molecule, with no mention of stereochemistry, although it is of prime importance for this type of molecules. It also seems that the notion of &#8216;buffer&#8217; does not (yet) exist, even though a &#8216;buffer calculator&#8217; would be quite useful&#8230;</p>
<p style="text-align: justify;">So have a look at <a href="http://www.wolframalpha.com/" target="_blank" title="WolframAlpha">WolframAlpha</a> if you need simple information (on chemistry or whatever else btw) and also have a look at their <a href="http://blog.wolframalpha.com/" target="_blank" title="WolframAlpha Blog">blog</a>, reporting their latest innovations and ideas.</p>
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