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	<title>ChemCafé &#187; chemistry</title>
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	<description>Chemistry and beyond</description>
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		<title>Chemical elements in limited supply</title>
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		<pubDate>Sun, 27 Feb 2011 13:15:44 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[chemical elements]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[lanthanides]]></category>
		<category><![CDATA[rare earth]]></category>
		<category><![CDATA[recycling]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[sustainability]]></category>

		<guid isPermaLink="false">http://www.chemcafe.net/?p=701</guid>
		<description><![CDATA[During the second half of 2010 a term usually reserved to specialized audiences started to spread in mainstream media: the rare-earth elements. Although they are not so scarce as their name would suggest, increasing concerns about their availability in the near future were expressed, and a recent issue of Nature Materials featured several articles dedicated [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">During the second half of 2010 a term usually reserved to specialized audiences started to spread in mainstream media: the rare-earth elements. Although they are not so scarce as their name would suggest, increasing concerns about their availability in the near future were expressed, and a recent issue of Nature Materials featured several articles dedicated to their numerous uses as well as to their limited sources.[1]</p>
<p style="text-align: justify;">The importance of rare earth elements is less obvious that that of more common resources &#8211; we don&#8217;t eat them nor power our cars with them. However, their use in many of recent high-tech innovations make them an invaluable resource for the decades to come: computer hard drives contain neodymium and dysprosium, tellurium is used in solar cells, and several rare earth elements are so far irreplacable in optical devices such as lasers, LEDs and phosphors. Although rare earths are not so scarce, their distribution on earth is uneven &#8211; and more than 90% are currently produced in China. The US and other countries consider (re)opening mining sites, but for the upcoming years, China will have an increasing weight and decision power over prices and distribution of rare earths.</p>
<p style="text-align: justify;">In order to ensure a sustainable use of scarce elements, strong incentives will be needed. For example in Japan, a country without such resources which industry highly depends on importation, the Element Strategy Initiative is a good example of such efforts.[2] Besides reuse and recycling, the potential lack of such elements can be regarded as another challenge for researchers worldwide, who are trying to find alternative materials, thus reducing the need for rare earths in the future.[3]</p>
<p style="text-align: justify;">More generally, the rare earth issue reflects a more general problem that may occur in the upcoming decades: I remember a seminar where a professor mentioned that, if the current trends go on, we will be running out of most precious metals (e.g., rhodium, platinum) in less than a hundred years. Further, resources of lithium (for rechargeable batteries) and phosphorous (for fertilizers) are also limited. In every single field, from &#8217;simple&#8217; food production to state-of-the-art technologies, the limited resources of our planet will eventually constrain us to play the equilibrist&#8217;s game of long-term sustainability.</p>
<p>References:</p>
<p>[1] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 157. DOI: <a title="Elements in short supply" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2985.html" target="_blank">10.1038/nmat2985</a><br />
[2] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 158. DOI: <a title="Managing the scarcity of chemical elements" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2969.html" target="_blank">10.1038/nmat2969</a><br />
[3] <em>Nature Materials</em> <strong>2011</strong>, <em>10</em>, 162. DOI: <a title="Purveyor of the rare" href="http://www.nature.com/nmat/journal/v10/n3/full/nmat2973.html" target="_blank">10.1038/nmat2973</a></p>
<p>See also:</p>
<p><em>Nature Photonics</em> <strong>2011</strong>, <em>5</em>, 1. DOI: <a title="The new oil?" href="http://www.nature.com/nphoton/journal/v5/n1/full/nphoton.2010.308.html" target="_blank">10.1038/nphoton.2010.308</a></p>
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		<title>EU Ban on Bisphenol A in Baby Bottles Next Year</title>
		<link>http://www.chemcafe.net/eu-ban-on-bisphenol-a-in-baby-bottles-next-year/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=eu-ban-on-bisphenol-a-in-baby-bottles-next-year</link>
		<comments>http://www.chemcafe.net/eu-ban-on-bisphenol-a-in-baby-bottles-next-year/#comments</comments>
		<pubDate>Sat, 04 Dec 2010 22:37:44 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[bisphenol A]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[intoxication]]></category>
		<category><![CDATA[polymer]]></category>
		<category><![CDATA[toxicity]]></category>

		<guid isPermaLink="false">http://www.chemcafe.net/?p=672</guid>
		<description><![CDATA[Bisphenol A (BPA) is one of the world&#8217;s most widely manufactured chemicals and can be found virtually everywhere &#8211; it is present in many polymer plastics, food and drink containers, toys, computers, baby bottles, and medical equipment. BPA can easily leach from these products (e.g. in packaged food and drinks), and is therefore detectable in [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;"><strong>Bisphenol A</strong> (BPA) is one of the world&#8217;s most widely manufactured chemicals and can be found virtually everywhere &#8211; it is present in many polymer plastics, food and drink containers, toys, computers, baby bottles, and medical equipment. BPA can easily leach from these products (e.g. in packaged food and drinks), and is therefore detectable in most people in Western countries. Moreover, BPA is also present in the special (thermal) paper used in till receipts and credit cards terminals. Here, the compound is present as a free monomer, and it was discovered that &#8216;free&#8217; BPA can be efficiently absorbed through the skin.</p>
<p style="text-align: justify;">The compound has been known for decades to mimic the effects of estrogen in the body. Hence, particular concerns have been raised regarding the absorption of BPA by pregnant women and babies. Particularly, it was suggested that BPA-containing baby bottles should be avoided, since they are extremely likely to leach BPA in baby drinks. Further, BPA was related to illnesses such as obesity, heart disease, cancer, diabetes, fertility problems, and birth defects.</p>
<p style="text-align: justify;">So far, Canada and Australia have been the first countries to classify BPA as toxic (despite recriminations from the chemical industry), and France and Denmark had already banned BPA from baby bottles. On 25 November, 2010, the European Union executive commission decided to ban production, and commercialization, of polycarbonate-based baby bottles containing bisphenol A. The new regulations will be enforced during the first semester of 2011.</p>
<p style="text-align: justify;">However, some criticize the decision, calling it more political than based on sound science, and not every country is ready to ban BPA. In Swizerland, where we usually like to do things differently, the Federal Office of Public Health considers BPA as non-harmful for consumers, since only high doses are known to be problematic. According to them, a ban on BPA would lead manufacturers to employ other, lesser known compounds, which toxicity is still unknown.</p>
<p style="text-align: justify;">Then, is a ban on BPA an over-reaction or a wise precaution? Only the future (and more experiments) will tell.</p>
<p style="text-align: justify;">Further reading:</p>
<p style="text-align: justify;"><a title="Bisphenol A goes through the skin" href="http://www.nature.com/news/2010/101104/full/news.2010.581.html" target="_blank">http://www.nature.com/news/2010/101104/full/news.2010.581.html</a></p>
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		<title>And the 2010 Nobel Prize in Chemistry goes to&#8230; Chemistry!</title>
		<link>http://www.chemcafe.net/and-the-2010-nobel-prize-in-chemistry-goes-to-chemistry/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=and-the-2010-nobel-prize-in-chemistry-goes-to-chemistry</link>
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		<pubDate>Wed, 06 Oct 2010 11:43:37 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[Opinions]]></category>
		<category><![CDATA[carbon-carbon bond]]></category>
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		<category><![CDATA[cross-coupling]]></category>
		<category><![CDATA[nobel]]></category>
		<category><![CDATA[nobel prize]]></category>
		<category><![CDATA[organic chemistry]]></category>
		<category><![CDATA[organic synthesis]]></category>
		<category><![CDATA[palladium]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=630</guid>
		<description><![CDATA[After yesterday&#8217;s Nobel Prize in Physics which went to two relatively young researchers (Andre Geim* and Konstantin  Novoselov from the University of Manchester) for a very recent discovery (graphene, isolated in 2004), today&#8217;s Prize in Chemistry went to much older people for discoveries made 40 years ago: Richard F. Heck (emeritus professor at the [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">After yesterday&#8217;s <a title="2010 Nobel Prize in Physics" href="http://nobelprize.org/nobel_prizes/physics/laureates/2010/index.html" target="_blank">Nobel Prize in Physics</a> which went to two relatively young researchers (<a title="Andre Geim" href="http://onnes.ph.man.ac.uk/~geim/" target="_blank">Andre Geim</a>* and <a title="Konstantin Novoselov" href="http://www.manchester.ac.uk/research/konstantin.novoselov/" target="_blank">Konstantin  Novoselov</a> from the <a title="University of Manchester" href="http://www.manchester.ac.uk/" target="_blank">University of Manchester</a>) for a very recent discovery (graphene, isolated in 2004), today&#8217;s <a title="2010 Nobel Prize in Chemistry" href="http://nobelprize.org/nobel_prizes/chemistry/laureates/2010/index.html" target="_blank">Prize in Chemistry</a> went to much older people for discoveries made 40 years ago: Richard F. Heck (emeritus professor at the <a title="University of Delaware" href="http://www.udel.edu/" target="_blank">University of Delaware</a>), Prof. <a title="Ei-ichi Negishi" href="http://www.chem.purdue.edu/people/faculty/faculty.asp?itemID=52" target="_blank">Ei-ichi Negishi</a> from <a title="Purdue University" href="http://www.purdue.edu/" target="_blank">Purdue University</a>, and Akira Suzuki (emeritus professor at <a title="Hokkaido University" href="http://www.hokudai.ac.jp/en/" target="_blank">Hokkaido University</a>) were awarded <em>for palladium-catalyzed cross couplings in organic synthesis</em>. As mentioned by the Nobel Committee, the developed reactions made it possible to synthesize many new molecules of biological and medical interest (among them taxol and discodermolide) and will continue to have a great impact on research and engineering in the future. One can speculate whether some other pioneers of palladium catalysis would also have deserved the prize (Stille, Tsuji, Trost) but it&#8217;s good to see the Nobel Prize in chemistry awarding &#8216;real&#8217; chemists again!</p>
<p style="text-align: justify;">On the live webcast visible on the <a title="nobelprize.org" href="http://nobelprize.org/index.html" target="_blank">Nobelprize</a> website, the Prize announcement was followed by a live phone interview with Prof. Negishi. He let the audience know he was awaken at 5 in the morning by the phone call announcing him the good news, and that he just had time for a coffee before the interview took place. I imagine this was but the beginning of a very long day for him! Quite amusing was when a journalist asked Negishi about the impact of his discoveries for the human beings. At that, Negishi responded something like &#8216;Do you have any knowledge of Grignard chemistry?&#8217; The journalist laughed before admitting that he had no clue about it, and Negishi explained the impact of carbon cross couplings in much simpler terms.</p>
<p style="text-align: justify;">* Andre Geim is probably the first researcher to detain a Nobel Prize together with a Ig Nobel Prize, obtained in 2000 for <a title="Of flying frogs and levitrons" href="http://iopscience.iop.org/0143-0807/18/4/012/" target="_blank">levitating a frog with magnets</a>.</p>
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		<title>More chemistry from Nürnberg</title>
		<link>http://www.chemcafe.net/more-chemistry-from-nurnberg/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=more-chemistry-from-nurnberg</link>
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		<pubDate>Sun, 05 Sep 2010 14:48:45 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
		<category><![CDATA[Anslyn]]></category>
		<category><![CDATA[catalysis]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[Cronin]]></category>
		<category><![CDATA[de Cola]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=616</guid>
		<description><![CDATA[Tuesday&#8217;s plenary session involved Bert Meijer (from Eindhoven University of Technology) speaking about self-organizing polymers into complex assemblies. Very interesting stuff, and I spent part of the day in the session of supramolecular chemistry, attending a  lecture by Eric Anslyn on one of my favourite topics (arrays of differential sensors), and some time in [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Tuesday&#8217;s plenary session involved <a title="Prof. E. W. Meijer" href="http://www.icms.tue.nl/en/people/prof_dr_ew_bert_meijer/" target="_blank">Bert Meijer</a> (from <a title="Eindhoven University of Technology" target="_blank" href="http://w3.tue.nl/en/">Eindhoven University of Technology</a>) speaking about <strong>self-organizing polymers</strong> into complex assemblies. Very interesting stuff, and I spent part of the day in the session of supramolecular chemistry, attending a  lecture by <a title="Prof. E. V. Anslyn" href="http://anslyn.cm.utexas.edu/research/index.html" target="_blank">Eric Anslyn</a> on one of my favourite topics (arrays of <strong>differential sensors</strong>), and some time in the catalysis session, where I observed a very clear trend towards the use of &#8216;environmentally friendly&#8217; metal catalysts such as copper or iron and a slow disappearance of precious metals such as platinum or rhodium. As one of the speakers said (unfortunately I forgot his name), &#8216;The stone age didn&#8217;t end because we ran out of stones&#8217;, and the &#8216;precious metals age&#8217; might well go to an end before we run out of precious metals!</p>
<p style="text-align: justify;">The next day, I saw a talk from <a title="Prof. L. de Cola" href="http://www.uni-muenster.de/Physik.PI/DeCola/ldc.html" target="_blank">Luisa de Cola</a>, who makes really nice looking assemblies of <strong>zeolithes</strong> with alternating colors (very recently reported in <a title="Dynamic Microcrystal Assembly by Nitroxide Exchange Reactions" href="http://onlinelibrary.wiley.com/doi/10.1002/anie.201002851/abstract" target="_blank">Angewandte</a>), and one from <a title="Prof. Leroy Cronin" href="http://www.chem.gla.ac.uk/cronin/" target="_blank">Lee Cronin</a> who, presented the concept of iChell (hope Apple did not protect the name) as inorganic chemical cell, made of large polyoxometallate compounds.</p>
<div id="attachment_618" class="wp-caption aligncenter" style="width: 716px"><img class="size-full wp-image-618 " title="mcontent" src="http://www.chemcafe.net/wp-content/uploads/2010/09/mcontent.gif" alt="Self-assembly of “green” zeolite crystals and &quot;red” crystals leads to highly regular crystal chains with strictly alternating colors. (reproduced from Schulte, B., Tsotsalas, M., Becker, M., Studer, A. and De Cola, L. ,  Angew. Chem. Int. Ed. doi: 10.1002/anie.201002851)" width="706" height="114" /><p class="wp-caption-text">Self-assembly of “green” zeolite crystals and &quot;red” crystals leads to highly regular crystal chains with strictly alternating colors. (reproduced from Schulte, B., Tsotsalas, M., Becker, M., Studer, A. and De Cola, L. ,  Angew. Chem. Int. Ed. doi: 10.1002/anie.201002851)</p></div>
<p style="text-align: justify;">Wednesday was also the day of the Congress Party, that took place in the VIP area of the football stadium (the easyCredit Stadion) with a big buffet and unlimited drinks, human table football games, and fireworks. That was quite a party, and a very good time&#8230; I hope they put some pics on the <a title="EuCheMS Congress in Nürnberg" href="http://www.euchems-congress2010.org/" target="_blank">congress website</a> soon!</p>
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		<title>Does technological progress mean less respect?</title>
		<link>http://www.chemcafe.net/does-technological-progress-mean-less-respect/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=does-technological-progress-mean-less-respect</link>
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		<pubDate>Mon, 30 Aug 2010 23:07:04 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Miscellaneous]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[dye sensitized solar cell]]></category>
		<category><![CDATA[energy]]></category>
		<category><![CDATA[EuChEMS]]></category>
		<category><![CDATA[grätzel]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=605</guid>
		<description><![CDATA[Still reporting from Nürnberg (where the EuCheMS meeting takes place this week), I had the opportunity this morning to observe and think on how people behave at a conference.
In my imagination, conferences in the past involved a passionate speaker (usually wearing a hat) who was disclosing his/her latest discoveries, vehemently speaking or writing on a [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Still reporting from Nürnberg (where the <a title="3 rd EuCheMS Chemistry Congress Nürnberg 2010" href="http://www.euchems-congress2010.org/" target="_blank">EuCheMS meeting</a> takes place this week), I had the opportunity this morning to observe and think on how people behave at a conference.</p>
<p style="text-align: justify;">In my imagination, conferences in the past involved a passionate speaker (usually wearing a hat) who was disclosing his/her latest discoveries, vehemently speaking or writing on a blackboard (sometimes performing live experiments) while the audience was listening in a profound, respectful silence.</p>
<p style="text-align: justify;">Today, what I saw was somewhat different &#8211; and I&#8217;m not talking of speakers not wearing hats. Actually, I was at a presentation seating next to a professor, <em>who was preparing the powerpoint he was going to present in the afternoon</em>. To do this, he had to ask his collaborator, seated next to him, about the meaning of some graphs he intended to include in the presentation. This took approximately one hour, and was quite disturbing to all the people around, since the discussion included mumblings and laughters.</p>
<p style="text-align: justify;">So, without even considering half of the members of the audience who checked their e-mails or the news on CNN every 5 minutes on their iPhone, I was wondering whether the speaker was noticing this lack of attention. The answer I guessed is probably no (because speakers are generally too busy and stressed to notice what happens behind the front row) but still, I&#8217;m wondering why people go to talks to prepare their own slides??</p>
<p style="text-align: justify;">Besides, I wanted to mention today&#8217;s plenary session, where Prof. <a title="Michael Grätzel" href="http://isic2.epfl.ch/page58671-en.html" target="_blank">Michael Grätzel</a> from <a href="http://www.epfl.ch/index.en.html">EPFL</a> (it&#8217;s always funny to go abroad to attend talks from our own faculty) presented the latest advances in dye sensitized solar cells (DSCs). I still hope to write a full post about Prof. Grätzel&#8217;s work sometimes  (like next October 6th), and here I just want to mention that there is now a <a title="Michael Grätzel Center" href="http://222.20.94.9:8083/article.php?catPath=0,1,1019&amp;catID=1035&amp;articleID=172" target="_blank">Michael Grätzel Center</a> in Wuhan (China) which, I think, is quite something. The optimism and enthusiasm of Prof. Grätzel are always extraordinarily communicative (especially when it comes to <a title="Dyesol" href="http://www.dyesol.com/page/Home" target="_blank">recent applications</a>), and I&#8217;m deeply convinced that the future is bright for dye-sensitized solar cells</p>
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		<title>EuCheMS in Nürnberg</title>
		<link>http://www.chemcafe.net/euchems-in-nurnberg/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=euchems-in-nurnberg</link>
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		<pubDate>Sun, 29 Aug 2010 22:54:11 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[News]]></category>
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		<description><![CDATA[Hi, I&#8217;m back on ChemCafé after a long, moreless justified, interruption.* I&#8217;m now reporting almost live from Nürnberg (Germany) where the 3rd edition of EuCheMS (unpronounceable acronym for European Association for Chemical and Molecular Sciences) chemistry congress takes place this week. I&#8217;ll try to send regularly short posts reflecting the atmosphere of this event.
Today was [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">Hi, I&#8217;m back on ChemCafé after a long, moreless justified, interruption.* I&#8217;m now reporting almost live from <a title="Nuremberg" href="http://www.nuernberg.de/internet/portal_e/index.html" target="_blank">Nürnberg</a> (Germany) where the 3rd edition of EuCheMS (unpronounceable acronym for <a title="European Association for Chemical and Molecular Sciences" href="http://www.euchems.org/" target="_blank">European Association for Chemical and Molecular Sciences</a>) <a title="3rd EuCheMS Chemistry Congress Nürnberg 2010" href="http://www.euchems-congress2010.org/" target="_blank">chemistry congress</a> takes place this week. I&#8217;ll try to send regularly short posts reflecting the atmosphere of this event.</p>
<p style="text-align: justify;">Today was the opening day, and thousands (really!) of chemists gathered in the huge congress center. The first -and only- talk I attended (due to a somewhat late arrival) was given by Prof. <a title="Klaus Müllen" href="http://www.mpip-mainz.mpg.de/groups/muellen/director" target="_blank">Klaus Müllen</a> (from the <a title="Max Plank Institute for Polymer Research" href="http://www.mpip-mainz.mpg.de/www" target="_blank">Max Planck Institute for Polymer Research</a> in Mainz). He quite impressively demonstrated how perfect graphene ribbons can be generated by bottom-up synthesis and subsequent reactions of benzene dendrimers (contrary to the method involving the peeling of graphite with tape). A very motivated and passionate speaker, he captivated his audience by showing amazing results, obtained by a careful design of a &#8216;core&#8217; molecule, followed by its self-assembly into more complex structures.</p>
<p style="text-align: justify;">This lecture was definitely a good start, and I&#8217;m looking forward to the next ones.</p>
<p>For more details:</p>
<p><em>Nature</em> <strong>2010</strong>, <em>466</em>, 470-473 doi: <a title="Atomically precise bottom-up fabrication of graphene nanoribbons" href="http://www.nature.com/nature/journal/v466/n7305/full/nature09211.html" target="_blank">10.1038/nature09211</a></p>
<p><em>Advanced Materials</em>, <strong>2010</strong>. doi: <a title="Carbon Nanotube/Hexa-peri-hexabenzocoronene Bilayers for Discrimination Between Nonpolar Volatile Organic Compounds of Cancer and Humid Atmospheres" href="http://onlinelibrary.wiley.com/doi/10.1002/adma.201001275/abstract" target="_blank">10.1002/adma.201001275<br />
</a></p>
<p>*I had to deal with my thesis writing &amp; exam and some funding application stuff recently&#8230; and was close to an overdose of chemistry, hence my absence from the web.</p>
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		<title>On the Use of Mice as Reaction Vessels</title>
		<link>http://www.chemcafe.net/on-the-use-of-mice-as-reaction-vessels/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=on-the-use-of-mice-as-reaction-vessels</link>
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		<pubDate>Mon, 01 Feb 2010 22:50:17 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Molecules & Reactions]]></category>
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		<category><![CDATA[bertozzi]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[click chemistry]]></category>
		<category><![CDATA[dipolar cycloadditions]]></category>
		<category><![CDATA[glycan]]></category>
		<category><![CDATA[ligation]]></category>
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		<guid isPermaLink="false">http://www.chemcafe.net/?p=563</guid>
		<description><![CDATA[Synthetic chemists use to perform their reactions in various pieces of glassware such as round-bottomed flasks, vials, Schlenk tubes of simple beakers. An article recently published in PNAS(1) reports synthetic chemistry performed in an unusual environment, as the authors present it, &#8216;in the physiologically relevant context of a mouse&#8216;!
The team from University of California (UC) [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;"><strong>Synthetic chemists</strong> use to perform their reactions in various pieces of glassware such as round-bottomed flasks, vials, Schlenk tubes of simple beakers. An <a title="Copper-free click chemistry in living animals" href="http://www.pnas.org/content/early/2010/01/07/0911116107.abstract" target="_blank">article</a> recently published in <a title="Proceedings of the National Academy of Sciences of the USA" href="http://www.pnas.org/" target="_blank">PNAS</a>(1) reports synthetic chemistry performed in an unusual environment, as the authors present it, &#8216;in the physiologically relevant context of a <strong>mouse</strong>&#8216;!</p>
<p style="text-align: justify;">The team from <a title="UC Berkeley" href="http://berkeley.edu/" target="_blank">University of California (UC) Berkeley</a>, and the <a target="_blank" title="Lawrence Berkeley National Laboratory" href="http://www.lbl.gov/">Lawrence Berkeley National Laboratory</a>, led by <a title="Bertozzi Research Group" href="http://www.cchem.berkeley.edu/crbgrp/" target="_blank">Carolyn Bertozzi</a>, adapted the methodology known as &#8216;<strong>click-chemistry</strong>&#8216; to the particular conditions required by &#8216;in vivo&#8217; conditions. Indeed, the original &#8216;click&#8217; procedures, developed by Barry Sharpless (2), involved the use of <strong>toxic copper catalysts</strong>. In their article, the authors use a copper-free click reaction to label <strong>glycans</strong> &#8211; sugars particularly abundant on the surface of cells, where they are active in cell activity signalling, as well as in response to infections &#8211; which are thought of as appealing target for molecular imaging inside living organisms.</p>
<p style="text-align: justify;">The first step involved the injection of azide-containing sugar derivatives, which are known to metabolically label glycans with the azide function. Then, a purposedly designed molecule carrying a signalling unit as well as a function reactive towards azides, had to be injected. The click reaction proceeded and as a result, glycans could be labeled in vivo, which paves the way for future <strong>specific biomolecule labeling</strong> <em>inside</em> living organisms.</p>
<div id="attachment_573" class="wp-caption aligncenter" style="width: 492px"><img class="size-full wp-image-573" title="mouse" src="http://www.chemcafe.net/wp-content/uploads/2010/02/mouse.jpg" alt="Click chemistry inside a mouse (reproduced from ref. 1)" width="482" height="427" /><p class="wp-caption-text">Click chemistry inside a mouse (reproduced from ref. 1)</p></div>
<p style="text-align: justify;">References:<br />
(1) Pamela V. Chang, Jennifer A. Prescher, Ellen M. Sletten, Jeremy M. Baskin, Isaac A. Miller, Nicholas J. Agard,<br />
Anderson Lo, and Carolyn R. Bertozzi, &#8220;Copper-free click chemistry in living animals&#8221;, <em>Proc. Natl. Acad. Sci. USA</em>,  published online before print January 14, 2010. doi:<a href="http://www.pnas.org/content/early/2010/01/07/0911116107.abstract" target="_blank" title="Copper-free click chemistry in living animals">10.1073/pnas.0911116107</a></p>
<p style="text-align: justify;">(2) H. C. Kolb, M. G. Finn and K. B. Sharpless &#8220;Click Chemistry: Diverse Chemical Function from a Few Good Reactions&#8221;, <em>Angew. Chem., Int. Ed.</em> <strong>2001</strong>, <em>40</em> 2004–2021. doi:<a title="Click Chemistry: Diverse Chemical Function from a Few Good Reactions" href="http://www3.interscience.wiley.com/journal/82003397/abstract" target="_blank">10.1002/1521-3773(20010601)40:11&lt;2004::AID-ANIE2004&gt;3.0.CO;2-5</a></p>
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		<title>The chemistry of fall colors</title>
		<link>http://www.chemcafe.net/the-chemistry-of-fall-colors/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=the-chemistry-of-fall-colors</link>
		<comments>http://www.chemcafe.net/the-chemistry-of-fall-colors/#comments</comments>
		<pubDate>Mon, 02 Nov 2009 21:50:50 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Molecules & Reactions]]></category>
		<category><![CDATA[autumn]]></category>
		<category><![CDATA[carotene]]></category>
		<category><![CDATA[chemistry]]></category>
		<category><![CDATA[chlorophyll]]></category>
		<category><![CDATA[colors]]></category>
		<category><![CDATA[dyes]]></category>
		<category><![CDATA[fall]]></category>

		<guid isPermaLink="false">http://www.chemcafe.net/?p=507</guid>
		<description><![CDATA[To romantic people such as chemists, autumn and its spectacular colors provides every year an endless source of wonder. Rather unsurprisingly, a couple of coloured chemicals are involved in the process, which leads several billions tons of leaves to go from green to red, yellow or orange, and finally to fall and let the winter [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">To romantic people such as chemists, autumn and its spectacular colors provides every year an endless source of wonder. Rather unsurprisingly, a couple of coloured chemicals are involved in the process, which leads several billions tons of leaves to go from green to red, yellow or orange, and finally to fall and let the winter come&#8230;</p>
<p style="text-align: justify;">It is well known that the &#8216;usual&#8217; green colour is due to the presence of chlorophyll in the leaves, which harvest red and blue light to fuel photosynthetic reactions. In turn, photosynthesis allows the plant to produce carbohydrates (sugars) to sustain growth and development, together with converting carbon dioxide into oxygen. When temperatures start to decrease, and days to shorten, the amount of chlorophyll in the leaves slowly decays. Indeed, warm temperatures are required for the plant to replace the chlorophyll which is gradually decomposed over time. As the concentration of chlorophyll decreases, other dye molecules present in the leaves become more and more visible. These are essentially carotene (which gives carrots their colour) and anthocyanins (present in red grapes and wine). Depending on the tree, and on the weather conditions, the leaves become yellow or more red-brown as the green colour fades, giving rise to awesome landscapes. I spent some holiday in Japan just one year ago, and the weather forecast during this period includes very detailed maps showing the &#8216;red leaves forecast&#8217;!</p>
<div id="attachment_511" class="wp-caption aligncenter" style="width: 550px"><img class="size-large wp-image-511" title="IMGP2037" src="http://www.chemcafe.net/wp-content/uploads/2009/11/IMGP2037-1024x768.jpg" alt="Autumn colors in Japan, here in Shirakawa-go...." width="540" height="405" /><p class="wp-caption-text">Autumn colors in Japan, here in Shirakawa-go....</p></div>
<div id="attachment_510" class="wp-caption aligncenter" style="width: 550px"><img class="size-large wp-image-510" title="IMGP1866" src="http://www.chemcafe.net/wp-content/uploads/2009/11/IMGP1866-1024x768.jpg" alt="... and in Nikko." width="540" height="405" /><p class="wp-caption-text">... and in Nikko.</p></div>
<p>And here are some of the molecules responsible for these various and impressive color changes:</p>
<p><img class="aligncenter size-full wp-image-532" title="dyes" src="http://www.chemcafe.net/wp-content/uploads/2009/11/dyes.bmp" alt="dyes" /></p>
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		<title>Organophosphorus Chemistry &#8211; How to get rid of nerve agents?</title>
		<link>http://www.chemcafe.net/organophosphorus-chemistry-how-to-get-rid-of-them/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=organophosphorus-chemistry-how-to-get-rid-of-them</link>
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		<pubDate>Mon, 12 Oct 2009 19:12:09 +0000</pubDate>
		<dc:creator>admin</dc:creator>
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		<category><![CDATA[julius rebek]]></category>
		<category><![CDATA[nerve agents]]></category>
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		<description><![CDATA[When inhalated, organophosphorus compounds can cause death within minutes. Although they are prohibited by the Chemical Convention Weapons, several states still possess large stockpiles of these chemicals, and terrorist organisations are not particularly known for complying with international conventions &#8211; one of these organophosphorus compounds is sarin, (in)famous for having been spread in the Tokyo [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">When inhalated, <strong>organophosphorus compounds</strong> can cause death within minutes. Although they are prohibited by the Chemical Convention Weapons, several states still possess large stockpiles of these chemicals, and terrorist organisations are not particularly known for complying with international conventions &#8211; one of these organophosphorus compounds is <strong>sarin</strong>, (in)famous for having been spread in the Tokyo subway by the sect Aum Shinrikyo in 1995, killing 12 people and injuring a thousand others.</p>
<p style="text-align: justify;">In this context, lots of effort is dedicated to find ways to detect and destroy such compounds before they can cause harm. An appealing solution was recently proposed by a research team led by <a href="http://www.scripps.edu/skaggs/rebek/" target=£"_blank" title="Julius Rebek Jr.">Julius Rebek, Jr</a>. at the <a href="http://www.scripps.edu/e_index.html" target="_blank" title="The Scripps Research Institute">Scripps Institute</a>. In an article recently published in <a href="http://www3.interscience.wiley.com/journal/26737/home" target="_blank" title="Angewandte Chemie International Edition">Angewandte</a>, they show how their novel molecules can signal the presence of organophosphorus compounds, but also render them harmless by undergoing a rapid reaction.</p>
<p style="text-align: justify;">The sensing systems is based on an aromatic ring equipped with an oxime group (C=N-OH), which is known to react with organophosphorus compounds. The intermediate product instantaneously reacts further (which is important since at this point, the toxicity survives) to form a harmless decomposition compound and a fluorescent unit, which is used to signal the fact that the reaction has occured, and therefore the presence of toxic chemicals! Really smart approach!</p>
<p><img class="aligncenter size-full wp-image-496" title="rebek" src="http://www.chemcafe.net/wp-content/uploads/2009/10/rebek.bmp" alt="rebek" /></p>
<p>References:<br />
T. J. Dale, J. Rebek, Jr. <em>Angew. Chem., Int. Ed.</em> <strong>2009</strong>, <em>48</em>, 7850 –7852. <a href="http://www3.interscience.wiley.com/journal/122597479/abstract" target="_blank" title="Hydroxy Oximes as Organophosphorus Nerve Agent Sensors">DOI: 10.1002/anie.200902820</a></p>
<p>Press release: <a href="http://www.wiley-vch.de/vch/journals/2002/press/200936press.html" target="_blank" title="New reagent for the detection of organophosphate neurotoxins with an extremely fast response">Ring Closure as Warning</a></p>
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		<title>2009 Nobel Prize in &#8220;Chemistry&#8221;</title>
		<link>http://www.chemcafe.net/2009-nobel-prize-in-chemistry/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=2009-nobel-prize-in-chemistry</link>
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		<pubDate>Wed, 07 Oct 2009 20:06:27 +0000</pubDate>
		<dc:creator>admin</dc:creator>
				<category><![CDATA[Opinions]]></category>
		<category><![CDATA[biochemistry]]></category>
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		<description><![CDATA[It is a pity Mr Nobel did not think about including a prize for biology in his final will. Today&#8217;s announcement was eagerly awaited in my department, particularly since a very member of our institute was part of the Thomson Reuters nominees, which raised considerable buzz over the last couple of weeks. We all crossed [...]]]></description>
			<content:encoded><![CDATA[<p style="text-align: justify;">It is a pity <a title="Alfred Nobel" href="http://nobelprize.org/alfred_nobel/" target="_blank">Mr Nobel</a> did not think about including a prize for biology in his final will. Today&#8217;s announcement was eagerly awaited in my department, particularly since a very member of our <a title="ISIC EPFL" href="http://isic2.epfl.ch/page69066.html" target="_blank">institute</a> was part of the <a title="Thomson Reuters 2009 Nobel Prize predictions" href="http://science.thomsonreuters.com/nobel/nominees/" target="_blank">Thomson Reuters nominees</a>, which raised considerable buzz over the last couple of weeks. We all crossed our fingers for Prof <a title="Michael Grätzel" href="http://isic2.epfl.ch/page58671.html" target="_blank">Michael Grätzel</a> to be the awardee, but only to discover that the Prize was going, again, to&#8230; biology.</p>
<p style="text-align: justify;">Of course, I am not critisizing the <a title="2009 Nobel Prize in Chemistry Laureates" href="http://nobelprize.org/nobel_prizes/chemistry/laureates/2009/" target="_blank">recipients</a>&#8216; work (anyway, I couldn&#8217;t since I am a chemist and don&#8217;t know lots of things about ribosomes, apart from their double-potato shape they always have in basic biology textbooks) nor the fact that it deserves recognition, but the point is that the Nobel prize in chemistry went to people who actually do chemistry, say, five times in the last 10 years (2000: conductive polymers, 2001: catalysis, 2002: mass spec and NMR, 2003: cell membranes, 2004: ubiquitin and protein degradation, 2005: metathesis, 2006: eukaryotic transcription, 2007: chemistry on surfaces, 2008: GFP and 2009: ribosomes). So, what about creating a Nobel Prize in biology? They did it for Economics in the 60s&#8230;</p>
<p style="text-align: justify;">Well now we just have to wait for next year &#8211; and hope that people working with molecules lighter than 50 kDa will be recognized as chemists. I&#8217;m quite sure there are hosts of guys working in organic synthesis, catalysis, nanotechnology or physical chemistry &#8211; to mention a few &#8211; who deserve to get the next Nobels. And regarding Grätzel&#8230; I keep my celebrating post for next year!</p>
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